Gone With the Wind

Thursday, October 16, 2008

easy way of compiling code?

http://www.deisa.eu/science/benchmarking

wget \
http://www.deisa.eu/science/benchmarking/files/benchmark_NAMD.tar.gz
gunzip benchmark_NAMD.tar.gz
tar xf benchmark_NAMD.tar
#--- Download NAMD source from http://www.ks.uiuc.edu/Research/namd/
mv NAMD_2.6_Source.tar.gz DEISA_BENCH/applications/NAMD/src/
cd DEISA_BENCH/applications/NAMD/
perl ../../bench/jube -debug bench-Cray-XT4-HECToR.xml
Posted by Bin Zhang at 9:03 AM
Labels: NAMD_VMD

No comments:

Post a Comment

Newer Post Older Post Home
Subscribe to: Post Comments (Atom)

Blog Archive

  • ▼  2008 (40)
    • ►  December (1)
    • ►  November (6)
    • ▼  October (22)
      • interpolate missing residues in pdb file
      • periodic table
      • necessary components in protein translocation
      • HOW THE PHOTOCOPIER WORKS
      • LDB problem
      • Align molecule
      • Use pymol to build alpha helix
      • making helix using Modeller
      • Color molecule using electrostatic potential
      • Alpha Helix
      • stop typing pwd using ssh
      • easy way of compiling code?
      • Protein terminus
      • Lipid Tail Selection
      • Make code working on NERSC
      • VMD movie plugin for MAC
      • Wham calculation
      • Hydrophobic effect
      • Non-integer calculation in Shell
      • problem with the solvation
      • wall -- send a message to everybody's terminal.
      • swig wrap c++ and tcl(Makefile)
    • ►  September (11)

Labels

  • NAMD_VMD
  • Chemistry
  • software
  • Shell
  • Science
  • matlab tips

About Me

Bin Zhang
View my complete profile